3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
8UJD|1|L5|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_091 not in the Motif Atlas
Homologous match to IL_8CRE_066
Geometric discrepancy: 0.3419
The information below is about IL_8CRE_066
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

8UJD|1|L5|U|2415
8UJD|1|L5|G|2416
8UJD|1|L5|A|2417
8UJD|1|L5|A|2418
8UJD|1|L5|C|2419
*
8UJD|1|L5|G|2427
8UJD|1|L5|A|2428
8UJD|1|L5|A|2429

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


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