3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GA*UACC
Length
6 nucleotides
Bulged bases
8UJD|1|L5|A|4385
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_124 not in the Motif Atlas
Homologous match to IL_8P9A_322
Geometric discrepancy: 0.0594
The information below is about IL_8P9A_322
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

8UJD|1|L5|G|3916
8UJD|1|L5|A|3917
*
8UJD|1|L5|U|4384
8UJD|1|L5|A|4385
8UJD|1|L5|C|4386
8UJD|1|L5|C|4387

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8

Coloring options:


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