IL_8UJD_124

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8UJD|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_124 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.0594

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8UJD|1|L5|G|3916
8UJD|1|L5|A|3917
*
8UJD|1|L5|U|4384
8UJD|1|L5|A|4385
8UJD|1|L5|C|4386
8UJD|1|L5|C|4387

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8