IL_8UJD_152

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8UJD|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_152 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.2005

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8UJD|1|L5|A|4681
8UJD|1|L5|U|4682
8UJD|1|L5|U|4683
8UJD|1|L5|A|4684
8UJD|1|L5|U|4685
*
8UJD|1|L5|A|4705
8UJD|1|L5|G|4706
8UJD|1|L5|A|4707
8UJD|1|L5|A|4708
8UJD|1|L5|U|4709

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40