IL_8UJJ_018

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8UJJ|1|L5|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_018 not in the Motif Atlas

Geometric match to IL_8P9A_421

Geometric discrepancy: 0.3953

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8UJJ|1|L5|G|443
8UJJ|1|L5|G|444
8UJJ|1|L5|U|445
8UJJ|1|L5|C|446
*
8UJJ|1|L5|G|1300
8UJJ|1|L5|C|1301
8UJJ|1|L5|U|1302
8UJJ|1|L5|A|1303
8UJJ|1|L5|C|1304

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a