IL_8UJJ_148
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8UJJ|1|L5|U|4634, 8UJJ|1|L5|U|4636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_148 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.3281
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UJJ|1|L5|U|4632
8UJJ|1|L5|G|4633
8UJJ|1|L5|U|4634
8UJJ|1|L5|A|4635
8UJJ|1|L5|U|4636
8UJJ|1|L5|G|4637
*
8UJJ|1|L5|C|4662
8UJJ|1|L5|G|4663
8UJJ|1|L5|A|4664
8UJJ|1|L5|A|4665
8UJJ|1|L5|G|4666
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LW
- Ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
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