IL_8UJJ_225
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_225 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.0937
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8UJJ|1|S2|G|942
8UJJ|1|S2|U|943
8UJJ|1|S2|A|944
8UJJ|1|S2|U|945
*
8UJJ|1|S2|A|981
8UJJ|1|S2|G|982
8UJJ|1|S2|A|983
8UJJ|1|S2|C|984
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sa
- 40S ribosomal protein S26
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