IL_8UJK_088
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8UJK|1|L5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJK_088 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.1348
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.1
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 23
Unit IDs
8UJK|1|L5|C|2302
8UJK|1|L5|C|2303
8UJK|1|L5|U|2304
8UJK|1|L5|U|2305
8UJK|1|L5|G|2306
8UJK|1|L5|A|2307
8UJK|1|L5|A|2308
8UJK|1|L5|G|2309
*
8UJK|1|L5|U|2329
8UJK|1|L5|G|2330
8UJK|1|L5|G|2331
8UJK|1|L5|A|2332
8UJK|1|L5|G|2333
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Le
- 60S ribosomal protein L32
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