IL_8UJK_094

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAUGG*CGUU

Length

9 nucleotides

Bulged bases

8UJK|1|L5|U|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_094 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3775

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8UJK|1|L5|G|2483
8UJK|1|L5|A|2484
8UJK|1|L5|U|2485
8UJK|1|L5|G|2486
8UJK|1|L5|G|2487
*
8UJK|1|L5|C|2492
8UJK|1|L5|G|2493
8UJK|1|L5|U|2494
8UJK|1|L5|U|2495

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a