3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
AACAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJK_103 not in the Motif Atlas
Homologous match to IL_8P9A_302
Geometric discrepancy: 0.1231
The information below is about IL_8P9A_302
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_89862.1
Basepair signature
cWW-L-tHS-L-R-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8UJK|1|L5|A|2832
8UJK|1|L5|A|2833
8UJK|1|L5|C|2834
8UJK|1|L5|A|2835
8UJK|1|L5|A|2836
8UJK|1|L5|U|2837
8UJK|1|L5|G|2838
*
8UJK|1|L5|C|3850
8UJK|1|L5|U|3851
8UJK|1|L5|A|3852
8UJK|1|L5|U|3853

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LP
60S ribosomal protein L17
Chain Ld
60S ribosomal protein L31

Coloring options:


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