3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
UGGU*AA
Length
6 nucleotides
Bulged bases
8UJK|1|S2|G|113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJK_191 not in the Motif Atlas
Homologous match to IL_8CRE_398
Geometric discrepancy: 0.2373
The information below is about IL_8CRE_398
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_71421.1
Basepair signature
cWW-cWW
Number of instances in this motif group
27

Unit IDs

8UJK|1|S2|U|112
8UJK|1|S2|G|113
8UJK|1|S2|G|114
8UJK|1|S2|U|115
*
8UJK|1|S2|A|348
8UJK|1|S2|A|349

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11

Coloring options:


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