3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
8UJK|1|S2|U|361, 8UJK|1|S2|C|399, 8UJK|1|S2|C|400
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJK_202 not in the Motif Atlas
Homologous match to IL_8CRE_408
Geometric discrepancy: 0.1076
The information below is about IL_8CRE_408
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.4
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
6

Unit IDs

8UJK|1|S2|U|359
8UJK|1|S2|A|360
8UJK|1|S2|U|361
8UJK|1|S2|C|362
8UJK|1|S2|A|363
8UJK|1|S2|A|364
*
8UJK|1|S2|U|396
8UJK|1|S2|G|397
8UJK|1|S2|A|398
8UJK|1|S2|C|399
8UJK|1|S2|C|400
8UJK|1|S2|A|401
8UJK|1|S2|C|402
8UJK|1|S2|G|403

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11
Chain SX
40S ribosomal protein S23

Coloring options:


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