IL_8UKB_174
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUU*GUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8UKB|1|L5|G|5049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_174 not in the Motif Atlas
- Homologous match to IL_8C3A_138
- Geometric discrepancy: 0.1829
- The information below is about IL_8C3A_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8UKB|1|L5|G|5000
8UKB|1|L5|U|5001
8UKB|1|L5|U|5002
*
8UKB|1|L5|G|5045
8UKB|1|L5|U|5046
8UKB|1|L5|C|5047
8UKB|1|L5|A|5048
8UKB|1|L5|G|5049
8UKB|1|L5|C|5050
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LW
- Ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
Coloring options: