IL_8UKB_260

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8UKB|1|S2|C|1434

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_260 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1284

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8UKB|1|S2|U|1408
8UKB|1|S2|A|1409
*
8UKB|1|S2|U|1432
8UKB|1|S2|C|1433
8UKB|1|S2|C|1434
8UKB|1|S2|C|1435
8UKB|1|S2|C|1436
8UKB|1|S2|C|1437
8UKB|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20