IL_8UPO_012

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UPO|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1297

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UPO|1|D|G|147
8UPO|1|D|G|148
8UPO|1|D|A|149
8UPO|1|D|U|150
8UPO|1|D|A|151
8UPO|1|D|A|152
8UPO|1|D|C|153
*
8UPO|1|D|G|168
8UPO|1|D|C|169
8UPO|1|D|U|170
8UPO|1|D|A|171
8UPO|1|D|A|172
8UPO|1|D|U|173
8UPO|1|D|A|174
8UPO|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20