IL_8UPO_014

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8UPO|1|D|U|244, 8UPO|1|D|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.082

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8UPO|1|D|G|242
8UPO|1|D|A|243
8UPO|1|D|U|244
8UPO|1|D|U|245
8UPO|1|D|A|246
8UPO|1|D|G|247
*
8UPO|1|D|C|277
8UPO|1|D|G|278
8UPO|1|D|A|279
8UPO|1|D|C|280
8UPO|1|D|G|281
8UPO|1|D|A|282
8UPO|1|D|U|283
8UPO|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17