IL_8UPO_025
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGCCAG*CGGUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8UPO|1|D|A|532, 8UPO|1|D|U|534, 8UPO|1|D|A|535
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UPO_025 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0781
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UPO|1|D|G|515
8UPO|1|D|G|517
8UPO|1|D|C|518
8UPO|1|D|C|519
8UPO|1|D|A|520
8UPO|1|D|G|521
*
8UPO|1|D|C|528
8UPO|1|D|G|529
8UPO|1|D|G|530
8UPO|1|D|U|531
8UPO|1|D|A|532
8UPO|1|D|A|533
8UPO|1|D|U|534
8UPO|1|D|A|535
8UPO|1|D|C|536
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 21 nt long spacer
- Chain I
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S4
- Chain R
- 30S ribosomal protein S12
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