IL_8UPO_038

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8UPO|1|D|G|887
8UPO|1|D|G|888
8UPO|1|D|A|889
8UPO|1|D|G|890
8UPO|1|D|U|891
8UPO|1|D|A|892
8UPO|1|D|C|893
8UPO|1|D|G|894
*
8UPO|1|D|U|905
8UPO|1|D|A|906
8UPO|1|D|A|907
8UPO|1|D|A|908
8UPO|1|D|A|909
8UPO|1|D|C|910

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12