IL_8UPO_052

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_052 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1331

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8UPO|1|D|G|1124
8UPO|1|D|U|1125
8UPO|1|D|U|1126
8UPO|1|D|G|1127
8UPO|1|D|C|1128
*
8UPO|1|D|G|1144
8UPO|1|D|A|1145
8UPO|1|D|A|1146
8UPO|1|D|C|1147
8UPO|1|D|U|1148
8UPO|1|D|C|1149

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9

Chain P

30S ribosomal protein S10