IL_8UPO_059

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8UPO|1|D|C|1400, 8UPO|1|D|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_059 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8UPO|1|D|C|1399
8UPO|1|D|C|1400
8UPO|1|D|G|1401
*
8UPO|1|D|C|1501
8UPO|1|D|A|1502
8UPO|1|D|A|1503
8UPO|1|D|G|1504

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 21 nt long spacer

Chain B

Transfer RNA; tRNA

Chain O

30S ribosomal protein S9