IL_8UPO_113

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8UPO|1|a|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_113 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8UPO|1|a|C|1208
8UPO|1|a|U|1209
8UPO|1|a|G|1210
8UPO|1|a|C|1211
8UPO|1|a|G|1212
8UPO|1|a|A|1213
8UPO|1|a|A|1214
8UPO|1|a|G|1215
*
8UPO|1|a|U|1234
8UPO|1|a|G|1235
8UPO|1|a|G|1236
8UPO|1|a|A|1237
8UPO|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L20