IL_8UPO_206

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_206 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0691

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UPO|1|a|U|1851
8UPO|1|a|U|1852
8UPO|1|a|A|1853
8UPO|1|a|A|1854
8UPO|1|a|U|1855
8UPO|1|a|U|1856
8UPO|1|a|G|1857
8UPO|1|a|A|1858
8UPO|1|a|U|1859
8UPO|1|a|G|1860
*
8UPO|1|a|U|1882
8UPO|1|a|U|1883
8UPO|1|a|G|1884
8UPO|1|a|A|1885
8UPO|1|a|U|1886
8UPO|1|a|C|1887
8UPO|1|a|G|1888
8UPO|1|a|A|1889
8UPO|1|a|A|1890
8UPO|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA