IL_8UQM_085

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQM_085 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.104

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8UQM|1|a|U|703
8UQM|1|a|G|704
8UQM|1|a|A|705
8UQM|1|a|A|706
8UQM|1|a|G|707
*
8UQM|1|a|U|724
8UQM|1|a|G|725
8UQM|1|a|G|726
8UQM|1|a|A|727
8UQM|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2