IL_8UQM_208

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQM_208 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0691

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UQM|1|a|U|1851
8UQM|1|a|U|1852
8UQM|1|a|A|1853
8UQM|1|a|A|1854
8UQM|1|a|U|1855
8UQM|1|a|U|1856
8UQM|1|a|G|1857
8UQM|1|a|A|1858
8UQM|1|a|U|1859
8UQM|1|a|G|1860
*
8UQM|1|a|U|1882
8UQM|1|a|U|1883
8UQM|1|a|G|1884
8UQM|1|a|A|1885
8UQM|1|a|U|1886
8UQM|1|a|C|1887
8UQM|1|a|G|1888
8UQM|1|a|A|1889
8UQM|1|a|A|1890
8UQM|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA