IL_8UR0_020

3D structure

PDB id

8UR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UR0_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2183

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8UR0|1|D|U|409
8UR0|1|D|G|410
8UR0|1|D|A|411
8UR0|1|D|A|412
8UR0|1|D|G|413
8UR0|1|D|A|414
8UR0|1|D|A|415
8UR0|1|D|G|416
*
8UR0|1|D|U|427
8UR0|1|D|G|428
8UR0|1|D|U|429
8UR0|1|D|A|430
8UR0|1|D|A|431
8UR0|1|D|A|432
8UR0|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4