IL_8URI_023

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1603

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8URI|1|D|G|450
8URI|1|D|A|451
8URI|1|D|A|452
8URI|1|D|G|453
8URI|1|D|G|454
8URI|1|D|G|455
*
8URI|1|D|C|477
8URI|1|D|A|478
8URI|1|D|U|479
8URI|1|D|U|480
8URI|1|D|G|481
8URI|1|D|A|482
8URI|1|D|C|483

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16