IL_8URI_041
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 8URI|1|D|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8URI_041 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1254
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8URI|1|D|G|933
8URI|1|D|C|934
8URI|1|D|A|935
*
8URI|1|D|U|1380
8URI|1|D|U|1381
8URI|1|D|C|1382
8URI|1|D|C|1383
8URI|1|D|C|1384
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
Coloring options: