IL_8URI_056
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 8URI|1|D|A|1257, 8URI|1|D|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8URI_056 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1213
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8URI|1|D|G|1255
8URI|1|D|A|1256
8URI|1|D|A|1257
8URI|1|D|G|1258
*
8URI|1|D|C|1277
8URI|1|D|G|1278
8URI|1|D|G|1279
8URI|1|D|A|1280
8URI|1|D|C|1281
8URI|1|D|C|1282
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S3
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: