IL_8URI_073
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8URI_073 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0696
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8URI|1|a|C|239
8URI|1|a|C|240
8URI|1|a|A|241
8URI|1|a|G|242
8URI|1|a|U|243
8URI|1|a|A|244
8URI|1|a|G|245
*
8URI|1|a|C|253
8URI|1|a|G|254
8URI|1|a|A|255
8URI|1|a|A|256
8URI|1|a|C|257
8URI|1|a|G|258
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
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