IL_8URI_090

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

8URI|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_090 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8URI|1|a|U|847
8URI|1|a|C|848
*
8URI|1|a|G|930
8URI|1|a|U|931
8URI|1|a|U|932
8URI|1|a|A|933

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30