IL_8URI_108

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8URI|1|a|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_108 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2603

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8URI|1|a|G|1059
8URI|1|a|U|1060
8URI|1|a|U|1061
8URI|1|a|G|1062
*
8URI|1|a|C|1076
8URI|1|a|A|1077
8URI|1|a|U|1078
8URI|1|a|C|1079

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L11