IL_8URI_179

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_179 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0819

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8URI|1|a|C|2652
8URI|1|a|U|2653
8URI|1|a|A|2654
8URI|1|a|G|2655
8URI|1|a|U|2656
8URI|1|a|A|2657
8URI|1|a|C|2658
*
8URI|1|a|G|2663
8URI|1|a|G|2664
8URI|1|a|A|2665
8URI|1|a|C|2666
8URI|1|a|C|2667
8URI|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6