IL_8URM_069

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8URM|1|1|A|1801, 8URM|1|1|C|1816, 8URM|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_069 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8URM|1|1|U|1798
8URM|1|1|G|1799
8URM|1|1|C|1800
8URM|1|1|A|1801
8URM|1|1|A|1802
8URM|1|1|A|1803
8URM|1|1|C|1804
*
8URM|1|1|G|1813
8URM|1|1|G|1814
8URM|1|1|A|1815
8URM|1|1|C|1816
8URM|1|1|G|1817
8URM|1|1|U|1818
8URM|1|1|A|1819
8URM|1|1|U|1820
8URM|1|1|A|1821

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2