3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_052 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1331
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

8URY|1|D|G|1124
8URY|1|D|U|1125
8URY|1|D|U|1126
8URY|1|D|G|1127
8URY|1|D|C|1128
*
8URY|1|D|G|1144
8URY|1|D|A|1145
8URY|1|D|A|1146
8URY|1|D|C|1147
8URY|1|D|U|1148
8URY|1|D|C|1149

Current chains

Chain D
16S rRNA

Nearby chains

Chain O
30S ribosomal protein S9
Chain P
Small ribosomal subunit protein uS10

Coloring options:


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