3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_092 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0649
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8URY|1|a|G|856
8URY|1|a|G|857
8URY|1|a|G|858
8URY|1|a|G|859
8URY|1|a|U|860
8URY|1|a|A|861
8URY|1|a|G|862
*
8URY|1|a|C|915
8URY|1|a|G|916
8URY|1|a|A|917
8URY|1|a|A|918
8URY|1|a|U|919
8URY|1|a|A|920
8URY|1|a|C|921

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
Large ribosomal subunit protein bL27
Chain d
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L30
Chain v
50S ribosomal protein L16

Coloring options:


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