3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8URY|1|a|C|1211
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URY_113 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.0743
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8URY|1|a|C|1208
8URY|1|a|U|1209
8URY|1|a|G|1210
8URY|1|a|C|1211
8URY|1|a|G|1212
8URY|1|a|A|1213
8URY|1|a|A|1214
8URY|1|a|G|1215
*
8URY|1|a|U|1234
8URY|1|a|G|1235
8URY|1|a|G|1236
8URY|1|a|A|1237
8URY|1|a|G|1238

Current chains

Chain a
23S rRNA

Nearby chains

Chain z
50S ribosomal protein L20

Coloring options:


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