IL_8UT0_003

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8UT0|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_003 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.1042

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8UT0|1|2|U|37
8UT0|1|2|C|38
8UT0|1|2|A|39
8UT0|1|2|A|40
8UT0|1|2|A|41
*
8UT0|1|2|U|466
8UT0|1|2|G|467
8UT0|1|2|A|468
8UT0|1|2|C|469
8UT0|1|2|A|470
8UT0|1|2|A|471

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A