IL_8UT0_021

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8UT0|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_021 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.1277

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73789.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8UT0|1|2|G|363
8UT0|1|2|G|364
8UT0|1|2|G|365
*
8UT0|1|2|C|376
8UT0|1|2|G|377
8UT0|1|2|A|378
8UT0|1|2|U|379
8UT0|1|2|U|380
8UT0|1|2|C|381

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A