IL_8UT0_031

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_031 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.3143

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8UT0|1|2|A|550
8UT0|1|2|G|551
8UT0|1|2|G|552
8UT0|1|2|G|553
8UT0|1|2|C|554
8UT0|1|2|A|555
8UT0|1|2|A|556
8UT0|1|2|G|557
*
8UT0|1|2|C|587
8UT0|1|2|U|588

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S2

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A