IL_8UT0_038

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_038 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.1528

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8UT0|1|2|A|746
8UT0|1|2|C|747
*
8UT0|1|2|G|802
8UT0|1|2|A|803
8UT0|1|2|A|804
8UT0|1|2|U|805

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SU

40S ribosomal protein S7-A

Chain SX

40S ribosomal protein S11-A

Chain Sb

40S ribosomal protein S22-A

Chain Sc

40S ribosomal protein S23-A