IL_8UT0_045

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_045 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0775

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8UT0|1|2|G|871
8UT0|1|2|G|872
8UT0|1|2|U|873
8UT0|1|2|C|874
*
8UT0|1|2|G|953
8UT0|1|2|G|954
8UT0|1|2|A|955
8UT0|1|2|C|956

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S1-A

Chain SY

40S ribosomal protein S13

Chain Sf

40S ribosomal protein S27-A