IL_8UT0_052
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_052 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.1038
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8UT0|1|2|G|1041
8UT0|1|2|G|1042
8UT0|1|2|A|1043
8UT0|1|2|U|1044
*
8UT0|1|2|G|1074
8UT0|1|2|C|1075
8UT0|1|2|A|1076
8UT0|1|2|C|1077
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S0-A
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SY
- 40S ribosomal protein S13
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: