IL_8UT0_054

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_054 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.0801

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8UT0|1|2|G|1111
8UT0|1|2|G|1112
8UT0|1|2|A|1113
8UT0|1|2|G|1114
8UT0|1|2|U|1115
8UT0|1|2|A|1116
8UT0|1|2|U|1117
8UT0|1|2|G|1118
*
8UT0|1|2|U|1129
8UT0|1|2|G|1130
8UT0|1|2|A|1131
8UT0|1|2|A|1132
8UT0|1|2|A|1133
8UT0|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L41-A

Chain Sc

40S ribosomal protein S23-A