IL_8UT0_070

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8UT0|1|2|U|1370, 8UT0|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_070 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.4522

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8UT0|1|2|G|1352
8UT0|1|2|U|1353
8UT0|1|2|G|1354
*
8UT0|1|2|U|1369
8UT0|1|2|U|1370
8UT0|1|2|A|1371
8UT0|1|2|U|1372
8UT0|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S16-A

Chain SI

40S ribosomal protein S19-A