IL_8UT0_076

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8UT0|1|2|C|1637, 8UT0|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_076 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1841

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8UT0|1|2|C|1636
8UT0|1|2|C|1637
8UT0|1|2|G|1638
*
8UT0|1|2|C|1764
8UT0|1|2|A|1765
8UT0|1|2|A|1766
8UT0|1|2|G|1767

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Messenger RNA (5'-R(P*AP*AP*UP*AP*UP*GP*AP*AP*AP*A)-3')

Chain Se

40S ribosomal protein S26-B

Chain n

Transfer RNA; tRNA