IL_8UT0_081
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_081 not in the Motif Atlas
- Homologous match to IL_8P9A_457
- Geometric discrepancy: 0.0894
- The information below is about IL_8P9A_457
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8UT0|1|2|C|1653
8UT0|1|2|G|1654
8UT0|1|2|A|1655
8UT0|1|2|U|1656
*
8UT0|1|2|A|1744
8UT0|1|2|G|1745
8UT0|1|2|A|1746
8UT0|1|2|G|1747
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Sc
- 40S ribosomal protein S23-A
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