3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CGAU*AGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_081 not in the Motif Atlas
Homologous match to IL_8P9A_457
Geometric discrepancy: 0.0894
The information below is about IL_8P9A_457
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

8UT0|1|2|C|1653
8UT0|1|2|G|1654
8UT0|1|2|A|1655
8UT0|1|2|U|1656
*
8UT0|1|2|A|1744
8UT0|1|2|G|1745
8UT0|1|2|A|1746
8UT0|1|2|G|1747

Current chains

Chain 2
18S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain Lp
60S ribosomal protein L41-A
Chain Sc
40S ribosomal protein S23-A

Coloring options:


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