3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUCA*UUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_086 not in the Motif Atlas
Homologous match to IL_8P9A_462
Geometric discrepancy: 0.1236
The information below is about IL_8P9A_462
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

8UT0|1|2|C|1675
8UT0|1|2|U|1676
8UT0|1|2|C|1677
8UT0|1|2|A|1678
*
8UT0|1|2|U|1723
8UT0|1|2|U|1724
8UT0|1|2|U|1725
8UT0|1|2|G|1726

Current chains

Chain 2
18S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain LY
60S ribosomal protein L24-A
Chain ST
40S ribosomal protein S6-A
Chain SV
40S ribosomal protein S8-A

Coloring options:


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