IL_8UT0_117

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_117 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0668

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8UT0|1|A|U|834
8UT0|1|A|G|835
8UT0|1|A|A|836
8UT0|1|A|A|837
8UT0|1|A|G|838
*
8UT0|1|A|U|855
8UT0|1|A|G|856
8UT0|1|A|G|857
8UT0|1|A|A|858
8UT0|1|A|G|859

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LT

60S ribosomal protein L19-A

Chain Lr

60S ribosomal protein L43-A