3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UUAAG*CUAUA
Length
10 nucleotides
Bulged bases
8UT0|1|A|U|1331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_134 not in the Motif Atlas
Homologous match to IL_8P9A_276
Geometric discrepancy: 0.0919
The information below is about IL_8P9A_276
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8UT0|1|A|U|1167
8UT0|1|A|U|1168
8UT0|1|A|A|1169
8UT0|1|A|A|1170
8UT0|1|A|G|1171
*
8UT0|1|A|C|1328
8UT0|1|A|U|1329
8UT0|1|A|A|1330
8UT0|1|A|U|1331
8UT0|1|A|A|1332

Current chains

Chain A
25S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain LI
60S ribosomal protein L7-A
Chain LS
60S ribosomal protein L18-A
Chain Lg
60S ribosomal protein L32
Chain Lh
60S ribosomal protein L33-A

Coloring options:


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