IL_8UT0_138
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8UT0|1|A|C|1196, 8UT0|1|A|A|1302, 8UT0|1|A|U|1305, 8UT0|1|A|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_138 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.0907
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UT0|1|A|G|1194
8UT0|1|A|A|1195
8UT0|1|A|C|1196
8UT0|1|A|A|1197
8UT0|1|A|C|1198
8UT0|1|A|C|1199
8UT0|1|A|A|1200
8UT0|1|A|C|1201
8UT0|1|A|A|1202
8UT0|1|A|A|1203
8UT0|1|A|A|1204
8UT0|1|A|A|1205
*
8UT0|1|A|U|1299
8UT0|1|A|G|1300
8UT0|1|A|A|1301
8UT0|1|A|A|1302
8UT0|1|A|A|1303
8UT0|1|A|A|1304
8UT0|1|A|U|1305
8UT0|1|A|G|1306
8UT0|1|A|G|1307
8UT0|1|A|A|1308
8UT0|1|A|U|1309
8UT0|1|A|G|1310
8UT0|1|A|G|1311
8UT0|1|A|C|1312
8UT0|1|A|G|1313
8UT0|1|A|C|1314
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lh
- 60S ribosomal protein L33-A
- Chain Lo
- 60S ribosomal protein L40-A
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