3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
8UT0|1|A|A|1588, 8UT0|1|A|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_148 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0806
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8UT0|1|A|C|1532
8UT0|1|A|U|1533
8UT0|1|A|A|1534
8UT0|1|A|A|1535
8UT0|1|A|G|1536
*
8UT0|1|A|C|1585
8UT0|1|A|G|1586
8UT0|1|A|A|1587
8UT0|1|A|A|1588
8UT0|1|A|A|1589
8UT0|1|A|G|1590

Current chains

Chain A
25S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain LD
60S ribosomal protein L2-A
Chain Li
60S ribosomal protein L34-A
Chain Ll
60S ribosomal protein L37-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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